| MirGeneDB ID | Loc-Mir-205-P1 |
|---|
| Family name |
MIR-205 (all species) |
|---|
| Seed |
UUCCCAG |
|---|
| Species |
Spotted gar (Lepisosteus oculatus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Loc-Mir-205-P4
Loc-Mir-205-P4-as
|
|---|
| Orthologues |
Cmi-Mir-205-P1
Lch-Mir-205-P1
Mal-Mir-205-P1-v1
Mal-Mir-205-P1-v2
Pma-Mir-205-o1
Sto-Mir-205-P1
Xla-Mir-205-P1a
Xla-Mir-205-P1b
Xtr-Mir-205-P1
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(LepOcu1) |
LG5: 51307018-51307075 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CACUGGCUGGCUGAUCGGCUCUUCCUGCUGUCCUUCAUUCCACCGGAUCCUGUUCCCUGACUGCAGAUUCCCAGUGGGAUGAGGCACAGCAUGGCGGGCGCUGAGCAACAGCAGCUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACUGGCUGGCUGAUCG-- UU - C C-| UC GUUCCC
GCUC CC UGCUGU CUUCAUUCCAC GGA CU \
CGGG GG ACGACA GGAGUAGGGUG CCU GA U
CGUCGACGACAACGAGUCG C- U C AC^ UA CGUCAG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Loc-Mir-205-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCCUUCAUUCCACCGGAUCCU -21
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-205-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
36- AUUCCCAGUGGGAUGAGGCACA -58
Get sequence
|
|---|
