MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-190-P1

Family name MIR-190 (all species)
Seed GAUAUGU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aae-Mir-190  Aca-Mir-190-P1  Ami-Mir-190-P1  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bla-Mir-190  Bpl-Mir-190  Bta-Mir-190-P1  Cbr-Mir-190  Cel-Mir-190  Cfa-Mir-190-P1  Cgi-Mir-190  Cli-Mir-190-P1  Cmi-Mir-190-P1  Cpi-Mir-190-P1  Cpo-Mir-190-P1  Cte-Mir-190  Dan-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dno-Mir-190-P1  Dpu-Mir-190  Dre-Mir-190-P1b  Dsi-Mir-190  Dya-Mir-190  Esc-Mir-190  Ete-Mir-190-P1  Gga-Mir-190-P1  Gja-Mir-190-P1  Gmo-Mir-190-P1a  Gmo-Mir-190-P1b  Hme-Mir-190  Hsa-Mir-190-P1  Isc-Mir-190  Lch-Mir-190-P1  Mal-Mir-190-P1a  Mal-Mir-190-P1b  Mdo-Mir-190-P1  Mml-Mir-190-P1  Mmu-Mir-190-P1  Mun-Mir-190-P1  Npo-Mir-190  Oan-Mir-190-P1  Obi-Mir-190  Ocu-Mir-190-P1  Ovu-Mir-190  Pbv-Mir-190-P1  Pfl-Mir-190  Pma-Mir-190-o1  Pmi-Mir-190  Rno-Mir-190-P1c  Rno-Mir-190-P1d  Sha-Mir-190-P1  Sko-Mir-190  Spt-Mir-190-P1  Sto-Mir-190-P1  Tca-Mir-190  Tgu-Mir-190-P1  Tni-Mir-190-P1a  Tni-Mir-190-P1b  Xbo-Mir-190 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG3: 52827211-52827269 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUGGAAGCCUUCUCUGCAGGGCUCUGUCUGAUAUGUUUGAUAUAUUAGGUUGUUAUUCAAUCCAACUAUAUAUCAAACAUAUUCCUACAGUGUCCCGCCCUGUCUCCAGACACUUGU
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Structure
        10          20        30         40        50         
ACCUGGAAGCCUUCUCU--  A    U    CU-|               UA     UUAU 
                   GC GGGC CUGU   GAUAUGUUUGAUAUAU  GGUUG    U
                   CG CCUG GACA   UUAUACAAACUAUAUA  UCAAC    C
UGUUCACAGACCUCUGUCC  C    U    UCC^               --     CUAA 
       110       100        90        80        70          60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-190-P1_5p
mirBase accessionNone
Sequence 
0- UGAUAUGUUUGAUAUAUUAGGUUG -24
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Co-mature sequence

Loc-Mir-190-P1_3p
mirBase accessionNone
Sequence 
36- ACUAUAUAUCAAACAUAUUCCUA -59
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