| MirGeneDB ID | Lgi-Novel-3-P1 |
|---|
| Family name |
LGI-NOVEL-3 (all species) |
|---|
| Seed |
CCACUCA |
|---|
| Species |
Owl limpet (Lottia gigantea) |
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| MiRBase ID |
|
|---|
| Paralogues |
Lgi-Novel-3-P2
|
|---|
| Orthologues |
|
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| Node of Origin (locus) |
L. gigantea
|
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| Node of Origin (family) |
L. gigantea
|
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Genome context
(Lotgi1) |
LOTGIsca_95: 478396-478454 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGUAACUGGGCUAAUAUUAGAGACCGGAAGUUGGAAGUUCACAUGGAUGUAGCCAUAUAGAACAGCUCCACUCAUGUGCACUUCCAGGUUUCUGGCUCGAAAAUCAACAAAGUGAGGAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGUAACUGGGCUAAUAUUA--| A - G U GA U CAUAU
GAG CCGGA A UUGGAAGU CACAUG UG AGC \
CUC GGUCU U GACCUUCA GUGUAC AC UCG A
GAGGAGUGAAACAACUAAAAG^ - U G C UC C ACAAG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Lgi-Novel-3-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UUGGAAGUUCACAUGGAUGUAGC -23
Get sequence
|
|---|
| Mature sequence |
Lgi-Novel-3-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UCCACUCAUGUGCACUUCCAGGU -59
Get sequence
|
|---|
