Mir-96-P1h

MirGeneDB ID

Lgi-Mir-96-P1h

Family name

MIR-96 (all species)

Seed

UUUGGCA

Species

Owl limpet (Lottia gigantea)

MiRBase ID

lgi-mir-96b

Paralogues

Lgi-Mir-96-P1i Lgi-Mir-96-P2 Lgi-Mir-96-P3

Orthologues

Ami-Mir-96-P1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cgi-Mir-96-P1h Cin-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Efe-Mir-96-P1 Esc-Mir-96-P1h Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Hsa-Mir-96-P1 Isc-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Loc-Mir-96-P1 Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Npo-Mir-96-P1h Oan-Mir-96-P1 Ocu-Mir-96-P1 Ovu-Mir-96-P1h Pbv-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1

Node of Origin (locus)

Mollusca

Node of Origin (family)

Bilateria

Genome context
(Lotgi1)

LOTGIsca_112: 69886-69944 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AUUGGUUUUCACUAUAAUGCGUAUGCAAUUAUUUGGCACUUGUGGAAUAAUCGGUAUAAAUAACAAGAUUAUACACCGGUGCCAAAUAACCGGUGGCGCUAAAUCAUCUAUACCAGAAG

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Structure

        10          20         30        40        50         
AUUGGUUUUCACUAUAAU--|   A   AA-            U   GA      GGUAUA 
                    GCGU UGC   UUAUUUGGCACU GUG  AUAAUC      A
                    CGCG GUG   AAUAAACCGUGG CAC  UAUUAG      A
GAAGACCAUAUCUACUAAAU^   -   GCC            C   A-      AACAAU 
       110       100         90        80         70        60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Lgi-Mir-96-P1h_5p (predicted)

mirBase accession

MIMAT0009576

Sequence

0- AUUUGGCACUUGUGGAAUAAUCG -23

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Star sequence

Lgi-Mir-96-P1h_3p* (predicted)

mirBase accession

None

Sequence

37- AUUAUACACCGGUGCCAAAUAA -59

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