| MirGeneDB ID | Lch-Mir-8-P1b |
|---|---|
| Family name | MIR-8 (all species) |
| Seed | AAUACUG |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-8-P1a Lch-Mir-8-P2a Lch-Mir-8-P3a |
| Orthologues | Aae-Mir-8 Asu-Mir-8 Bfl-Mir-8-P1-v1 Bfl-Mir-8-P1-v2 Bge-Mir-8 Bla-Mir-8-P1 Bpl-Mir-8 Bta-Mir-8-P1b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1b Cgi-Mir-8 Cin-Mir-8-P1 Cpo-Mir-8-P1b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dpu-Mir-8 Dre-Mir-8-P1b Dsi-Mir-8 Dya-Mir-8 Esc-Mir-8 Ete-Mir-8-P1b Hme-Mir-8 Hsa-Mir-8-P1b Isc-Mir-8 Lan-Mir-8 Lgi-Mir-8 Mdo-Mir-8-P1b Mml-Mir-8-P1b Mmu-Mir-8-P1b Npo-Mir-8 Oan-Mir-8-P1b Obi-Mir-8 Ocu-Mir-8-P1b Ovu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Rno-Mir-8-P1b Sha-Mir-8-P1b Sko-Mir-8 Spu-Mir-8 Tca-Mir-8 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
JH130573.1: 37887-37947 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | GUGCAUGCAGAAUUCUGGGAAAGUGGCCACCAUCUUACCGAGCAGCAUUUGAUGUGAGUCUCAGUGUCUAAUACUGCCUGGUAAUGAUGGAGCCAUUUUCCUGCUGUACGACAGAGCAAGAGet precursor sequence |
| Structure | 10 20 30 40 50 GUGCAUGCAGAAUUCUG---| CA - A C U UGUGAG GGAAAGUGGC CCAUC UUACCG GCAG AUU GA U CCUUUUACCG GGUAG AAUGGU CGUC UAA CU C AGAACGAGACAGCAUGUCGU^ A- U C A U GUGACU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Lch-Mir-8-P1b_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CAUCUUACCGAGCAGCAUUUGA -22
Get sequence
|
| Mature sequence | Lch-Mir-8-P1b_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UAAUACUGCCUGGUAAUGAUGGA -61
Get sequence
|
