| MirGeneDB ID | Lch-Mir-153-P2 |
|---|---|
| Family name | MIR-153 (all species) |
| Seed | UGCAUAG |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-153-P1 |
| Orthologues | Aca-Mir-153-P2 Ami-Mir-153-P2 Asu-Mir-153 Bfl-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P2 Cfa-Mir-153-P2 Cgi-Mir-153 Cin-Mir-153 Cli-Mir-153-P2 Cmi-Mir-153-P2 Cpi-Mir-153-P2 Cte-Mir-153 Dma-Mir-153 Dno-Mir-153-P2 Dpu-Mir-153 Dre-Mir-153-P2a Dre-Mir-153-P2b Gga-Mir-153-P2 Gja-Mir-153-P2 Gmo-Mir-153-P2a Hsa-Mir-153-P2 Isc-Mir-153 Lan-Mir-153 Lgi-Mir-153 Loc-Mir-153-P2 Mal-Mir-153-P2a Mal-Mir-153-P2b Mdo-Mir-153-P2 Mml-Mir-153-P2 Mun-Mir-153-P2 Npo-Mir-153 Oan-Mir-153-P2 Obi-Mir-153 Ovu-Mir-153 Pbv-Mir-153-P2 Pfl-Mir-153 Pma-Mir-153-o2 Pmi-Mir-153 Sha-Mir-153-P2 Sko-Mir-153 Sme-Mir-153 Spt-Mir-153-P2 Spu-Mir-153 Sto-Mir-153-P2 Tgu-Mir-153-P2 Tni-Mir-153-P2a Tni-Mir-153-P2b Xbo-Mir-153 Xla-Mir-153-P2c Xla-Mir-153-P2d Xtr-Mir-153-P2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
JH128459.1: 192280-192340 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | GCCAGAUAUCUCCGUUUCAUGGCUGCCAGUGUCAUUUUUGUGAUUUGCAGCUAGUAAUCUUCAGUCCAGUUGCAUAGUCACAAAAGUGAUCAUUGGCAGCUGUGUCUACUGCGUGGUGCAUGet precursor sequence |
| Structure | 10 20 30 40 50
GCCAGAUAUCUCCGUUUC - -| AGUAAUC
AUGGCUGCCAGUG UCAUUUUUGUGAUU UGCAGCU \
UGUCGACGGUUAC AGUGAAAACACUGA ACGUUGA U
UACGUGGUGCGUCAUCUG U U^ CCUGACU
. 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-153-P2_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GUCAUUUUUGUGAUUUGCAGCU -22
Get sequence
|
| Mature sequence | Lch-Mir-153-P2_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UUGCAUAGUCACAAAAGUGAUC -61
Get sequence
|
