| MirGeneDB ID | Lch-Mir-15-P1c |
|---|---|
| Family name | MIR-15 (all species) |
| Seed | AGCAGCA |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-15-P1a Lch-Mir-15-P1b Lch-Mir-15-P2a Lch-Mir-15-P2b Lch-Mir-15-P2c |
| Orthologues | Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mun-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (LatCha1_add) |
JH126623.1: 2023205-2023262 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | CAUUUGUUCUUUUCAGGCUUUGAGGAAAUGUAGCAGCACAUCAUGGUUUGUAGGGAUAAGGAGAUACAGACCAUUCUGAGCUGCCUCAGUUCCCCAAGGAAAAGACCACCAUACAGAUGet precursor sequence |
| Structure | 10 20 30 40 50 CAUUUGUUCUUUUCAGG--| A A UA A UC GGGAU CUUUG GGAA UG GCAGC CA AUGGUUUGUA A GGAAC CCUU AC CGUCG GU UACCAGACAU A UAGACAUACCACCAGAAAA^ C G UC A CU AGAGG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-15-P1c_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAGCAGCACAUCAUGGUUUGUA -22
Get sequence
|
| Star sequence | Lch-Mir-15-P1c_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- CAGACCAUUCUGAGCUGCCUCA -58
Get sequence
|
