| MirGeneDB ID | Lan-Mir-279-o40 |
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| Family name |
MIR-279 (all species) |
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| Seed |
GACUAGA |
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| Species |
Lingula (Lingula anatina) |
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| MiRBase ID |
|
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| Paralogues |
Lan-Mir-279-o41
|
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| Orthologues |
Bpl-Mir-279
Cgi-Mir-279
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
|
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| Node of Origin (locus) |
L. anatina
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(LinAna_1.0) |
LFEI01000429: 180847-180903 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CAGACGAUAGUUUAUUUCACCCUACCAGGGAUGAUUGUGCGUCUAGUCCAUGUAGCUGUGACAUCAUGACUAGAUCCACACUCAUCCCUGUUGGGGAACGCCAAGAGCAGACGACAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAGACGAUAGUUUAUUUCA--| C U C C UAGCU
CCCUA CAGGGAUGA UGUG GUCUAGUC AUG G
GGGGU GUCCCUACU ACAC UAGAUCAG UAC U
AACAGCAGACGAGAACCGCAA^ U C C - UACAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Lan-Mir-279-o40_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AUGAUUGUGCGUCUAGUCCAUG -22
Get sequence
|
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| Mature sequence |
Lan-Mir-279-o40_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UGACUAGAUCCACACUCAUCC -57
Get sequence
|
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