| MirGeneDB ID | Lan-Mir-2-o76 |
|---|
| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Lingula (Lingula anatina) |
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| MiRBase ID |
|
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| Paralogues |
Lan-Mir-2-o71
Lan-Mir-2-o72a
Lan-Mir-2-o72b
Lan-Mir-2-o73
Lan-Mir-2-o74
Lan-Mir-2-o75
Lan-Mir-2-o77a
Lan-Mir-2-o77b
Lan-Mir-2-o78
Lan-Mir-2-o79
|
|---|
| Orthologues |
|
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| Node of Origin (locus) |
L. anatina
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(LinAna_1.0) |
LFEI01000806: 164274-164333 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AUGACAUUUAGAGUGCUAGUGUCCCCGUGGGCAUCAAGGGGGCUGUGAUGUGUAGUCUAUUGUUCAUAUCACAGCCCGCUUUGAUGAGCUAUGAUGACACUUCAACGCCAUUGCUGCCUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUGACAUUUAGAGUGCU-- CC G- -| UAGUC
AGUGUC CGUGG CAUCAAGG GGGCUGUGAUGUG U
UCACAG GUAUC GUAGUUUC CCCGACACUAUAC A
AUCCGUCGUUACCGCAACU UA GA G^ UUGUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Lan-Mir-2-o76_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GCAUCAAGGGGGCUGUGAUGUG -22
Get sequence
|
|---|
| Mature sequence |
Lan-Mir-2-o76_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UAUCACAGCCCGCUUUGAUGAGCU -60
Get sequence
|
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