| MirGeneDB ID | Hvu-Mir-3007-v1 |
|---|
| Family name |
MIR-3007 (all species) |
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| Seed |
GUUCGGC |
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| Species |
Freshwater-polyp (Hydra vulgaris) |
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| MiRBase ID |
|
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| Paralogues |
Hvu-Mir-3007-v2
|
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| Orthologues |
|
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| Node of Origin (locus) |
H. vulgaris
|
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| Node of Origin (family) |
H. vulgaris
|
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Genome context
(Hm105_1.0) |
Sc4wPfr_3789: 111110-111160 [+]
|
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Precursor
(pre-Mir +30nt flank) |
AGUGACUUACUUAUUAACUUUGUGUCAACAUGUUCGGCGUUUUUACCUGCAGUGUAACUGUGGGUAAAAACGCCAAACAUGUUGACAAAAGCUGUUAUUUGUACGGAUUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUGACUUACUUAUUAA---| G C UG GUG
CUUU UGUCAACAUGUU GGCGUUUUUACC CA \
GAAA ACAGUUGUACAA CCGCAAAAAUGG GU U
UUUUAGGCAUGUUUAUUGUC^ - A GU CAA
. 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Hvu-Mir-3007-v1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUUCGGCGUUUUUACCUGCA -21
Get sequence
|
|---|
| Star sequence |
Hvu-Mir-3007-v1_3p* |
| mirBase accession | None |
|---|
| Sequence |
30- UGGGUAAAAACGCCAAACAUG -51
Get sequence
|
|---|
