| MirGeneDB ID | Hme-Novel-5-P4 |
|---|
| Family name |
HME-NOVEL-5 (all species) |
|---|
| Seed |
UUGCCUU |
|---|
| Species |
Longwing butterfly (Heliconius melpomene) |
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| MiRBase ID |
|
|---|
| Paralogues |
Hme-Novel-5-P1
Hme-Novel-5-P2
Hme-Novel-5-P3a
Hme-Novel-5-P3b
Hme-Novel-5-P5
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
H. melpomene
|
|---|
| Node of Origin (family) |
H. melpomene
|
|---|
Genome context
(Hmel_1) |
HE671980: 160228-160283 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAAGUGAAAUAUUUGAUGUGAUGGCGGAUGGGGGACUACCUAAUUGCAAGGUGUAUCUAUCGACUUUGCCUUUAGUUACUUUCCGAUCUGUUGGUGCACAUGACUACAAAUGAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAAGUGAAAUAUUUGAU--| AU G GG C C UU GUAU
GUG GGCGGAU GG A UA CUAA GCAAGGU C
CGU UUGUCUA CC U AU GAUU CGUUUCA U
AGAAGUAAACAUCAGUACA^ GG G UU C U UC GCUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Hme-Novel-5-P4_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGGGACUACCUAAUUGCAAGGU -22
Get sequence
|
|---|
| Mature sequence |
Hme-Novel-5-P4_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UUUGCCUUUAGUUACUUUCCGA -56
Get sequence
|
|---|
