MirGeneDB 2.1
MirGeneDB ID

Gga-Mir-33-P3

Family name MIR-33 (all species)
Seed UGCAUUG
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-33-1
Paralogues Gga-Mir-33-P1 
Orthologues Aae-Mir-33  Aca-Mir-33-P3  Ami-Mir-33-P3  Bge-Mir-33  Bta-Mir-33-P3  Cfa-Mir-33-P3  Cgi-Mir-33  Cin-Mir-33  Cli-Mir-33-P3  Cmi-Mir-33-P3  Cpi-Mir-33-P3  Cpo-Mir-33-P3  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dno-Mir-33-P3  Dpu-Mir-33  Dsi-Mir-33  Dya-Mir-33  Ebu-Mir-33  Efe-Mir-33  Esc-Mir-33  Ete-Mir-33-P3  Gja-Mir-33-P3  Hsa-Mir-33-P3  Isc-Mir-33  Lch-Mir-33-P3  Lgi-Mir-33  Loc-Mir-33-P3  Mal-Mir-33-P3  Mdo-Mir-33-P3  Mml-Mir-33-P3  Mmu-Mir-33-P3  Mun-Mir-33-P3  Npo-Mir-33  Oan-Mir-33-P3  Obi-Mir-33  Ocu-Mir-33-P3  Ovu-Mir-33  Pbv-Mir-33-P3  Pfl-Mir-33  Pma-Mir-33-o3  Pmi-Mir-33  Rno-Mir-33-P3  Sha-Mir-33-P3  Sko-Mir-33  Spt-Mir-33-P3  Spu-Mir-33  Sto-Mir-33-P3  Tca-Mir-33  Tgu-Mir-33-P3  Tni-Mir-33-P3  Xbo-Mir-33  Xla-Mir-33-P3a  Xla-Mir-33-P3b  Xtr-Mir-33-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)		 1: 49496339-49496399 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUCCCUGUCGCUCCUGGGUGGCAGCUGUAGUGCAUUGUAGUUGCAUUGCAUGUGCUGGCAGUAACUGUGCAAUGUUCCUGCAGUGCAGUACAGAGGCGCUUUCUAUUCGACAGAGCAGGU
Get precursor sequence
Structure
        10           20        30        40        50          
UGUCCCUGUCGCUCCUG---|   G AG     G          UU        UGUGCUGG 
                    GGUG C  CUGUA UGCAUUGUAG  GCAUUGCA        \
                    UCGC G  GACAU ACGUGACGUC  UGUAACGU        C
UGGACGAGACAGCUUAUCUU^   - GA     G          CU        GUCAAUGA 
 .       110       100         90        80        70
Deep sequencing
Go to detailed chart
CommentThe 3p arm is also monoadenylated at the 3' end.
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-33-P3_5p
mirBase accessionMIMAT0001100
Sequence 
0- GUGCAUUGUAGUUGCAUUGCA -21
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Proposed targets TargetScanVert: gga-miR-33-5p
miRDB: MIMAT0001100
Co-mature sequence

Gga-Mir-33-P3_3p
mirBase accessionMIMAT0026490
Sequence 
40- CAAUGUUCCUGCAGUGCAGUA -61
Get sequence
Proposed targets TargetScanVert: gga-miR-33-3p
miRDB: MIMAT0026490