| MirGeneDB ID | Esc-Novel-9-P1-v2 |
|---|
| Family name |
CEP-NOVEL-9 (all species) |
|---|
| Seed |
GGAUCUU |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Esc-Novel-9-P1-v1
Esc-Novel-9-P2-v1
Esc-Novel-9-P2-v2
|
|---|
| Orthologues |
Npo-Novel-9
|
|---|
| Node of Origin (locus) |
E. scolopes
|
|---|
| Node of Origin (family) |
Cephalopoda
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-9-P1-v1_pre_SRIE01024685.1:46199-46462: 101-164 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCGCAGCCGGAACCGCAGUCAGUUGUGUGCAGUUAGUGGUAAAGCCCUUGCAUUCGACCAGUCUAUCUAUGCAGGAUCUUUAGUCACUAGCUGCUCACCUUUGACACCACAGCAGACACACGCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCGCAGCCGGAACCGCA-- UU U -| CC AUUCGACCA
GUCAG GUG GCAGUUAGUGG UAAAG CUUGC \
CAGUU CAC CGUCGAUCACU AUUUC GGACG G
GCGCACACAGACGACACCA UC U G^ UA UAUCUAUCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Esc-Novel-9-P1-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUUAGUGGUAAAGCCCUUGC -21
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-9-P1-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
42- AGGAUCUUUAGUCACUAGCUGC -64
Get sequence
|
|---|
