| MirGeneDB ID | Esc-Novel-60 |
|---|
| Family name |
ESC-NOVEL-60 (all species) |
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| Seed |
CCGCGAU |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. scolopes
|
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| Node of Origin (family) |
E. scolopes
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-60_pre_SRIE01024040.1:4062124-4062382: 101-159 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGUACGACUGCAUUUCUUAUUUGGUAUUCCUCCGCGAUCAGUGACCACAGCAGCCAAACAAAUACGGUUGUGGGCAUCGAAAGCGGGGAAGUACUGAAGGGAUUACAGCACAGAAGACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUACGACUGCAUUUCUUA--| UG C GA A A AGCCAAA
UU GUAUU CUCCGC UC GUG CCACAGC \
AA CAUGA GGGGCG AG UAC GGUGUUG C
ACAGAAGACACGACAUUAGGG^ GU A AA C G GCAUAAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Esc-Novel-60_5p |
| mirBase accession | None |
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| Sequence |
0- UCCGCGAUCAGUGACCACAGC -21
Get sequence
|
|---|
| Star sequence |
Esc-Novel-60_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- UGUGGGCAUCGAAAGCGGGGA -59
Get sequence
|
|---|
