| MirGeneDB ID | Esc-Novel-59-v2 |
|---|
| Family name |
ESC-NOVEL-59 (all species) |
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| Seed |
GGACACA |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
Esc-Novel-59-v1
|
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| Orthologues |
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| Node of Origin (locus) |
E. scolopes
|
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| Node of Origin (family) |
E. scolopes
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-59-v1_pre_SRIE01019374.1:6661976-6662238: 100-164 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCAGGCGAUAUGGCAUUGGUGAUGUACCCAACCGUUCAUAUCUGAGUCCAGUUGGAACACAGGUCUGAAGAACUGGACACACAAAUGAACGGUUGGGUGGAUAUAUCCAAAAUCCUGGCAGCCGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCAGGCGAUAUGGCAUU- -| G AUC A UGGAACACA
GGUG AU UACCCAACCGUUCAU UG GUCCAGU \
CUAU UA GUGGGUUGGCAAGUA AC CAGGUCA G
CGCCGACGGUCCUAAAAC A^ G AAC A AGAAGUCUG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Star sequence |
Esc-Novel-59-v2_5p* |
| mirBase accession | None |
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| Sequence |
0- ACCGUUCAUAUCUGAGUCCAGU -22
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-59-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
43- UGGACACACAAAUGAACGGUUG -65
Get sequence
|
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