| MirGeneDB ID | Esc-Novel-54 |
|---|
| Family name |
COL-NOVEL-54 (all species) |
|---|
| Seed |
GCUAGCA |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Obi-Novel-54
Ovu-Novel-54
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-56_pre_SRIE01058715.1:858196-858340: 45-101 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUGUCUUGGUACUCCAGAGGCACGCUGGUCUGCUAGCAAUCUAUCGUGGUUAUGUAUUGUCCUCCACCACGCUGGUAUGCUGACAGUCUAUCGUGGCUACUACUCAUCCUGUUCUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGUCUUGGUACUCCAG--| G C U C AU U UAUGUAU
AG CACG UGG CUG UAGCA CUA CGUGGU \
UC GUGC AUC GAC GUCGU GGU GCACCA U
ACUCUUGUCCUACUCAUCA^ G U U A AU C CCUCCUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-54_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCUAGCAAUCUAUCGUGGUUA -22
Get sequence
|
|---|
| Co-mature sequence |
Esc-Novel-54_3p |
| mirBase accession | None |
|---|
| Sequence |
35- ACCACGCUGGUAUGCUGACAGU -57
Get sequence
|
|---|
