| MirGeneDB ID | Esc-Novel-51 |
|---|
| Family name |
COL-NOVEL-51 (all species) |
|---|
| Seed |
CCCUGCC |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Obi-Novel-51
Ovu-Novel-51
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-51_pre_SRIE01024114.1:448310-448451: 42-101 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAUGAGCGUGAAAAUUUGCUAUGGACUUGAACCCUGCCUUACUCUAGUUACAUAUACUUUCUUUAAUGUAGCUGACUGAGACAAGGGACCAGUUCAUAAGCGGAGCAAUAAGCGCUAGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAUGAGCGUGAAAAUUU-- -| U AA GC- C U AUACU
GC UAUGGACU G CCCU CUUA UC AGUUACAU U
CG AUACUUGA C GGGA GAGU AG UCGAUGUA U
AGGAUCGCGAAUAACGAGG A^ - CA ACA C - AUUUC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut -1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-51_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACCCUGCCUUACUCUAGUUACAU -23
Get sequence
|
|---|
| Star sequence |
Esc-Novel-51_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- GUAGCUGACUGAGACAAGGGACC -60
Get sequence
|
|---|
