| MirGeneDB ID | Esc-Novel-50 |
|---|
| Family name |
COL-NOVEL-50 (all species) |
|---|
| Seed |
GUCUCAU |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Obi-Novel-50
Ovu-Novel-50
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-50_pre_SRIE01047148.1:1408822-1408965: 44-101 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGUUCUAUAUUACCACCUGCUGAUUUCUAUUGUCUCAUGUAUUGGAAUGUUGCCUCAGUUUCACCAACAUUCCAGUGCCUGAGUCAUAGACAACAGUACCUCACAUCUCAUCUUCAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUUCUAUAUUACCACC---| AUU U U U CCUCA
UGCUG UCUAU G CUCA GUAUUGGAAUGUUG G
AUGAC AGAUA C GAGU CGUGACCUUACAAC U
CUACUUCUACUCUACACUCC^ AAC - U C CACUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-50_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUCUCAUGUAUUGGAAUGUUG -22
Get sequence
|
|---|
| Star sequence |
Esc-Novel-50_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- ACAUUCCAGUGCCUGAGUCAUA -58
Get sequence
|
|---|
