| MirGeneDB ID | Esc-Novel-38-v1 |
|---|
| Family name |
COL-NOVEL-38 (all species) |
|---|
| Seed |
UCAUCAU |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Esc-Novel-38-v2
|
|---|
| Orthologues |
Obi-Novel-38-v1
Ovu-Novel-38-v1
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-38-v1_pre_SRIE01052018.1:5122539-5122799: 101-161 [+]
Ensembl
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|---|
Precursor
(pre-Mir +30nt flank) |
GUGGUCGUCAAUAGGAAAGACAGGGCCAGUACAGCCUUGCAGGUGGUCAAAUACGUGUGUGAAAGACGUUUCAUCAUUCACAAGGCUGCACUGUCCUUGUUUACAUCAUCGAUUUACUGAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUGGUCGUCAAUAGGAA--| C A CA C ACGUGUG
AGACAGGG CAGU CAGCCUUG GGUGGU AAAU \
UUUGUUCC GUCA GUCGGAAC UUACUA UUUG U
GAGUCAUUUAGCUACUACA^ U C AC C CAGAAAG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Esc-Novel-38-v1_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- ACAGCCUUGCAGGUGGUCAAAU -22
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-38-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UUCAUCAUUCACAAGGCUGCAC -61
Get sequence
|
|---|
