| MirGeneDB ID | Esc-Novel-35-v3 |
|---|
| Family name |
COL-NOVEL-35 (all species) |
|---|
| Seed |
GUACGAA |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Esc-Novel-35-v1
Esc-Novel-35-v2
|
|---|
| Orthologues |
Obi-Novel-35-v3
Ovu-Novel-35-v3
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-35-v1_pre_SRIE01024843.1:1043292-1043548: 99-159 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AACGAUUUCUCAUUUUUCCACUGCAGUUGUUGUACGAACAAGUGGCUGUCGGUUGAAUUUUUAAGACAUCCGCGAUCACUUGUUGUAUGAAGGCAAACGCGUGGAGCUUUCAUCUUUAAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AACGAUUUCUCAUUUUUC U AG ---| G GC U UUGAAUUU
CAC GC UUGUU GUAC AACAAGUG UG CGG \
GUG CG AACGG UAUG UUGUUCAC GC GCC U
AAAAUUUCUACUUUCGAG - CA AAG^ - UA - UACAGAAU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-35-v3_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUACGAACAAGUGGCUGUCGGU -23
Get sequence
|
|---|
| Star sequence |
Esc-Novel-35-v3_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- CGCGAUCACUUGUUGUAUGAA -61
Get sequence
|
|---|
