| MirGeneDB ID | Esc-Novel-28 |
|---|
| Family name |
COL-NOVEL-28 (all species) |
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| Seed |
GACAUAA |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Obi-Novel-28
Ovu-Novel-28
|
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-28_pre_SRIE01049549.1:912191-912330: 40-101 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAUGAACCGAAAAUUUACUCGCAGAGUAUUUGACAUAACUUGGAACUCUAAAGUUGUUUUUGUUAGAACUUAGAAUUCCAGGUUACGCCAGCCAUUCUCGAGAAAGAUCAACAUCCUGAUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAUGAACCGAAAAUUUA---| C AU ACA C AGUUGUUU
CUCG AGAGU UUG UAACUUGGAA UCUAA U
GAGC UCUUA GAC AUUGGACCUU AGAUU U
ACUAGUCCUACAACUAGAAA^ - CC CGC A CAAGAUUG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Esc-Novel-28_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGACAUAACUUGGAACUCUAAA -22
Get sequence
|
|---|
| Star sequence |
Esc-Novel-28_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- UAGAAUUCCAGGUUACGCCAGC -62
Get sequence
|
|---|
