| MirGeneDB ID | Esc-Novel-25-v1 |
|---|
| Family name |
COL-NOVEL-25 (all species) |
|---|
| Seed |
UCGUGUA |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Esc-Novel-25-v2
|
|---|
| Orthologues |
Obi-Novel-25-v1
Ovu-Novel-25-v1
|
|---|
| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-25-v1_pre_SRIE01050902.1:2194681-2194822: 42-101 [-]
Ensembl
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|---|
Precursor
(pre-Mir +30nt flank) |
GCACGUUCAUUUUGAAUCGGUCUAACGUAACUCGUGUAACAGUUCUGAAGCCUGGAACAUUUGACGAGGUUUAAGACUGUCCCACGGGCUAAGUGAGGCUUGCAAACAUCAUGAUUUUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCACGUUCAUUUUGAAUC--| A G A UA U G UGGAACA
GGUCU AC UA CUCGUG ACAGU CU AAGCC \
UCGGA UG AU GGGCAC UGUCA GA UUUGG U
UUUUUUAGUACUACAAACGU^ G A C CC - A AGCAGUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Esc-Novel-25-v1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CUCGUGUAACAGUUCUGAAGCC -22
Get sequence
|
|---|
| Co-mature sequence |
Esc-Novel-25-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UUUAAGACUGUCCCACGGGCU -60
Get sequence
|
|---|
