| MirGeneDB ID | Esc-Novel-22-v1 |
|---|
| Family name |
COL-NOVEL-22 (all species) |
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| Seed |
UUUCUGU |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Esc-Novel-22-v2
|
|---|
| Orthologues |
Obi-Novel-22
Ovu-Novel-22
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-22-v1_pre_SRIE01046427.1:101401-101659: 101-159 [+]
Ensembl
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|---|
Precursor
(pre-Mir +30nt flank) |
UGGAGGUAGAUACUUGGCGAUUGGGGUACGUUUUCUGUUGCGCCAAGGGCAUAUUCGUAUUCUCUAUGCUCUGUCGCACCAAGAAGACAUAUCUGUCGCCUCCGCUACAUCACUACCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGAGGUAGAUACUUGG----| UG C GU- CCA UUCGU
CGAU GGGUA GUUUUCU UGCG AGGGCAUA \
GCUG UCUAU CAGAAGA ACGC UCUCGUAU A
CUCCAUCACUACAUCGCCUCC^ -- A ACC UG- CUCUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-22-v1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUUUCUGUUGCGCCAAGGGCAUA -23
Get sequence
|
|---|
| Star sequence |
Esc-Novel-22-v1_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- UGCUCUGUCGCACCAAGAAGACA -59
Get sequence
|
|---|
