| MirGeneDB ID | Esc-Novel-19 |
|---|
| Family name |
COL-NOVEL-19 (all species) |
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| Seed |
GUCUGUG |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Obi-Novel-19
Ovu-Novel-19
|
|---|
| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-19_pre_SRIE01055741.1:9845179-9845437: 101-159 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUUUUAUUCUUUGAAGAUGGCUUUGUGAAAUGUCUGUGGGAUAAAGGUUAGUCUUUAAAAGAUAAACUAACACUUAAACCAAUGACAUUUUACUCGGCUAAUGAACUGCCGUGCAGUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUUUAUUCUUUGAAGA--| UU UG GA AG CUUUAA
UGGCU GUGAAAUGUC UGG UAA GUUAGU \
AUCGG CAUUUUACAG ACC AUU CAAUCA A
ACUGACGUGCCGUCAAGUA^ CU UA AA CA AAUAGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-19_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUCUGUGGGAUAAAGGUUAGUC -23
Get sequence
|
|---|
| Star sequence |
Esc-Novel-19_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CUAACACUUAAACCAAUGACAUU -59
Get sequence
|
|---|
