| MirGeneDB ID | Esc-Novel-16 |
|---|
| Family name |
COL-NOVEL-16 (all species) |
|---|
| Seed |
CCGAUUG |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Obi-Novel-16-v1
Obi-Novel-16-v2
Ovu-Novel-16-v1
Ovu-Novel-16-v2
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-16_pre_SRIE01010247.1:1917746-1918000: 101-155 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCGCCCCCUACAGUUCACGGCCUAACACUUUCCGAUUGUUCUCAGUCCGACUCUGAGUUAAUAGUCGCACUUGAAAAAUCGGUGUGUGUGAACCGACCAAAACGCAUGUGAAGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCGCCCCCUACAGUUCA---| CCUA UUU G UC C CUGA
CGG ACAC CCGAUU UUC AGU CGACU G
GCC UGUG GGCUAA AAG UCA GCUGA U
AAGAAGUGUACGCAAAACCA^ AAG- UGU A U- C UAAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-16_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCCGAUUGUUCUCAGUCCGACU -22
Get sequence
|
|---|
| Star sequence |
Esc-Novel-16_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- UCGCACUUGAAAAAUCGGUGU -55
Get sequence
|
|---|
