| MirGeneDB ID | Esc-Mir-1984 |
|---|
| Family name |
MIR-1984 (all species) |
|---|
| Seed |
GCCCUAU |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cgi-Mir-1984
Lgi-Mir-1984
Npo-Mir-1984
Obi-Mir-1984-P1
Obi-Mir-1984-P2
Ovu-Mir-1984-P1
Ovu-Mir-1984-P2
|
|---|
| Node of Origin (locus) |
Mollusca
|
|---|
| Node of Origin (family) |
Mollusca
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Mir-1984_pre_SRIE01015988.1:88490-88628: 39-101 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUUUGCAUUCUGCCAUUUGAGUUGUUCAUUUGCCCUAUACCUCAGUCGCGGUGUUUUAAUUUGAAAUCACAGCGUCUGAUGUAUCGAGGCACCUCGGUAGCUCAGUGACAUCAGGCAAUGCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUUUGCAUUCUGCCAUU-- UUCAUU CU-| C U G UUUUAA
UGAGUUG UGCC AUAC UCAG CGC GUG U
ACUCGAU ACGG UAUG AGUC GCG CAC U
CACGUAACGGACUACAGUG GGCUCC AGC^ U U A UAAAGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Esc-Mir-1984_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCCCUAUACCUCAGUCGCGGUG -23
Get sequence
|
|---|
| Star sequence |
Esc-Mir-1984_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- CAGCGUCUGAUGUAUCGAGGCACC -63
Get sequence
|
|---|
