| MirGeneDB ID | Esc-Mir-153-P18b |
|---|
| Family name |
MIR-153 (all species) |
|---|
| Seed |
UGCAUAG |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
|---|
| Paralogues |
Esc-Mir-153-P18a
|
|---|
| Orthologues |
Asu-Mir-153
Bfl-Mir-153
Bla-Mir-153
Bpl-Mir-153
Cgi-Mir-153
Cin-Mir-153
Cte-Mir-153
Dma-Mir-153
Dpu-Mir-153
Isc-Mir-153
Lan-Mir-153
Lgi-Mir-153
Npo-Mir-153
Obi-Mir-153
Ovu-Mir-153
Pfl-Mir-153
Pmi-Mir-153
Sko-Mir-153
Sme-Mir-153
Spu-Mir-153
Xbo-Mir-153
|
|---|
| Node of Origin (locus) |
E. scolopes
|
|---|
| Node of Origin (family) |
Bilateria
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Mir-153-P18b_pre_SRIE01043446.1:16208-16351: 44-101 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUAUUGGCACUUACUUAUCAGUGAACCUGAAAGCUUUUGUGAUUUAGCGAUUGUAGACUUAACUAAUUGCAUAGUCACAAAAGUGAUCGGGAUGCUGACAAUCUCUACUAAUCUCUUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUAUUGGCACUUACUUA---| GAA AA UA GUAGA
UCAGU CCUGA GCUUUUGUGAUU GCGAUU C
AGUCG GGGCU UGAAAACACUGA CGUUAA U
GUUCUCUAAUCAUCUCUAAC^ UA- AG UA UCAAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Esc-Mir-153-P18b_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AAGCUUUUGUGAUUUAGCGAUU -22
Get sequence
|
|---|
| Mature sequence |
Esc-Mir-153-P18b_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UUGCAUAGUCACAAAAGUGAUC -58
Get sequence
|
|---|
