| MirGeneDB ID | Esc-Mir-10-P6 |
|---|
| Family name |
MIR-10 (all species) |
|---|
| Seed |
UUACCCU |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Esc-Mir-10-P3
|
|---|
| Orthologues |
Cgi-Mir-10-P6
Cte-Mir-10-P6
Efe-Mir-10-P6
Lgi-Mir-10-P6
Npo-Mir-10-P6
Nve-Mir-10
Ovu-Mir-10-P6
|
|---|
| Node of Origin (locus) |
Lophotrochozoa
|
|---|
| Node of Origin (family) |
Eumetazoa
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Mir-10-P6_pre_SRIE01021191.1:8354863-8355003: 41-101 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUAACCGAAUAUUUGCAGUCGAGGGAAAGACUUACCCUGUAAAUCGGAGAAGUGUCAAAUUAGACAAGCUUCUCGUUUCACAGGGUAUAUUUAUCCCACGGCAACAGUCAUCAAGAUGAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUAACCGAAUAUUUGCA-- A A CU -| CG GUCAAA
GUCG GGGA AGA UACCCUGU AAAU GAGAAGU U
CGGC CCCU UUU AUGGGACA UUUG CUCUUCG U
CAAGUAGAACUACUGACAA A A AU C^ -- AACAGA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Esc-Mir-10-P6_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CUUACCCUGUAAAUCGGAGAAGU -23
Get sequence
|
|---|
| Star sequence |
Esc-Mir-10-P6_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- UUCUCGUUUCACAGGGUAUAUU -61
Get sequence
|
|---|
