| MirGeneDB ID | Efe-Mir-2-o49 |
|---|
| Family name |
MIR-2 (all species) |
|---|
| Seed |
AUCACAG |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Efe-Mir-2-o44
Efe-Mir-2-o45
Efe-Mir-2-o46
Efe-Mir-2-o47
Efe-Mir-2-o48
Efe-Mir-2-o50
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(Efe_combined) |
Efet.01.159362: 1072-1126 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
NNACCAUGUUAUGGGGAGCAGCUGAAGGCCUGGUCAAAGAUUCUGUGAAAUGCUACUGAAUCAUAUCACAGCCGCUUUGACUGGUUCUUAACUGCAUCACAUCUUCACUUUCUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
NNACCAUGUUAUGGGGA---| C AG U AUU A CUAC
GCAG UGA GCC GGUCAAAG CUGUGA AUG \
CGUC AUU UGG UCAGUUUC GACACU UAC U
CGUCUUUCACUUCUACACUA^ A CU - GCC A UAAG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Efe-Mir-2-o49_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGGUCAAAGAUUCUGUGAAAUG -22
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-2-o49_3p |
| mirBase accession | None |
|---|
| Sequence |
33- UAUCACAGCCGCUUUGACUGGU -55
Get sequence
|
|---|
