MirGeneDB 2.1
MirGeneDB ID

Efe-Mir-1997-P4

Family name MIR-1997 (all species)
Seed GGCUGAU
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1997-P1  Efe-Mir-1997-P2  Efe-Mir-1997-P3  Efe-Mir-1997-P5 
Orthologues Cte-Mir-1997 
Node of Origin (locus) E. fetida
Node of Origin (family) Annelida
Genome context
(Efe_combined)		 scaffold10491-size15725: 1260-1321 [-]
Precursor
(pre-Mir +30nt flank)
AUAUAUUAUAGGCCUAAGACUCUGUUCACACGGCUGAUGAAACUUACAAAGUUGUCGUUCUGAUAUGGACUCUGCAGGUUUUAUCAGCCCUAUGACUGAAGUCGAAACGACUCAAUCCGUAG
Get precursor sequence
Structure
        10          20        30        40        50        60
AUAUAUUAUAGGCCUAA--|   CU U   CAC              A  A   UGUCGUU 
                   GACU  G UCA   GGCUGAUGAAACUU CA AGU       C
                   CUGA  U AGU   CCGACUAUUUUGGA GU UCA       U
GAUGCCUAACUCAGCAAAG^   AG C   AUC              C  C   GGUAUAG 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Efe-Mir-1997-P4_5p
mirBase accessionNone
Sequence 
0- CGGCUGAUGAAACUUACAAAGU -22
Get sequence
Star sequence

Efe-Mir-1997-P4_3p*
mirBase accessionNone
Sequence 
40- UCUGCAGGUUUUAUCAGCCCUA -62
Get sequence