Mir-190-P9

MirGeneDB ID

Efe-Mir-190-P9

Family name

MIR-190 (all species)

Seed

GAUAUGU

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-190-P10 Efe-Mir-190-P11 Efe-Mir-190-P12

Orthologues

Aae-Mir-190 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bla-Mir-190 Bpl-Mir-190 Cbr-Mir-190 Cel-Mir-190 Cgi-Mir-190 Cte-Mir-190 Dan-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dpu-Mir-190 Dsi-Mir-190 Dya-Mir-190 Esc-Mir-190 Hme-Mir-190 Isc-Mir-190 Npo-Mir-190 Obi-Mir-190 Ovu-Mir-190 Pfl-Mir-190 Pmi-Mir-190 Sko-Mir-190 Tca-Mir-190 Xbo-Mir-190

Node of Origin (locus)

E. fetida

Node of Origin (family)

Bilateria

Genome context
(Efe_combined)

Efet.01.392904: 384-443 [+]

Precursor
(pre-Mir +30nt flank)

ACAGUCAACAGAUGUGCUCCAUCUAAAGCCUGAUAUGUUUGAUAUUUGGUUUGUUGAAAUGAUAGCCAACCGUGCAUCGAACAUAUCACGCAAGAAAGAGAGCCUUUCACCAAGAUGUCG

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Structure

        10            20        30        40        50         
ACAGUCAACAGAUGUGC----| CA   AAA  C             AUU     UGUUGAA 
                     UC  UCU   GC UGAUAUGUUUGAU   UGGUU       A
                     AG  AGA   CG ACUAUACAAGCUA   GCCAA       U
GCUGUAGAACCACUUUCCGAG^ AA   A--  C             CGU     CCGAUAG 
.       110       100          90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Efe-Mir-190-P9_5p

mirBase accession

None

Sequence

0- UGAUAUGUUUGAUAUUUGGUUU -22

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Star sequence

Efe-Mir-190-P9_3p*

mirBase accession

None

Sequence

38- ACCGUGCAUCGAACAUAUCACG -60

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