| MirGeneDB ID | Efe-Let-7-P10 |
|---|
| Family name |
LET-7 (all species) |
|---|
| Seed |
GAGGUAG |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Efe-Let-7-P11
Efe-Let-7-P12
Efe-Let-7-P13
Efe-Let-7-P14
|
|---|
| Orthologues |
Aae-Let-7
Bge-Let-7
Bpl-Let-7
Cgi-Let-7
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Hme-Let-7
Isc-Let-7
Lan-Let-7
Lgi-Let-7
Npo-Let-7
Obi-Let-7
Ovu-Let-7
Pfl-Let-7
Pmi-Let-7
Sko-Let-7
Spu-Let-7
Tca-Let-7
Xbo-Let-7
|
|---|
| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(Efe_combined) |
Efet.01.122508: 4741-4806 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGGUGGGUUGAAGACGGGUGGACUUCUGGCUGAGGUAGUAGGUUGUAUAGUAGGGUUACAUCAAUUCAGGCGACUAUACAACCUUCUAGCUUUGACUGGCGGUCUACAAGAGACACCCUUCUCAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGGUGGGUUGAAGACGG-- U UG CU-| G U AGGGUUACAU
GUGGACU C G GAG UAG AGGUUGUAUAGU \
CAUCUGG G C UUC AUC UCCAACAUAUCA C
CGACUCUUCCCACAGAGAA C GU AGU^ G U GCGGACUUAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut -1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Efe-Let-7-P10_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAGGUAGUAGGUUGUAUAGUA -22
Get sequence
|
|---|
| Star sequence |
Efe-Let-7-P10_3p* |
| mirBase accession | None |
|---|
| Sequence |
43- CUAUACAACCUUCUAGCUUUGAC -66
Get sequence
|
|---|
