Mir-96-P1g

MirGeneDB ID

Ebu-Mir-96-P1g

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-96-P1e Ebu-Mir-96-P1f Ebu-Mir-96-P2e Ebu-Mir-96-P3e Ebu-Mir-96-P3f

Orthologues

Ami-Mir-96-P1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Efe-Mir-96-P1 Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Hsa-Mir-96-P1 Isc-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Loc-Mir-96-P1 Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Oan-Mir-96-P1 Ocu-Mir-96-P1 Pbv-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Bilateria

Genome context
(Eburgeri_3)

FYBX02000166.1: 1306588-1306647 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUCCAUUUCAACCUGCCGCUCCGGCUCCCUUUGGCACUAGCACAUACUUGCUUCCUGCAGCGAGUGUCAAAUAUGUGUCGUGCCAAGUGGGGACGAUGCGAUUUGCUGCUUGUGUAAUG

Get precursor sequence

Structure

        10          20        30        40        50          
CAUCCAUUUCAACCUGC--|  UC  G    C        UA       C   - UUCCUG 
                   CGC  CG CUCC UUUGGCAC  GCACAUA UUG C      C
                   GCG  GC GGGG GAACCGUG  UGUGUAU AAC G      A
GUAAUGUGUUCGUCGUUUA^  UA  A    U        C-       A   U UGAGCG 
.       110       100        90        80         70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ebu-Mir-96-P1g_5p

mirBase accession

None

Sequence

0- UUUGGCACUAGCACAUACUUGCU -23

Get sequence

Star sequence

Ebu-Mir-96-P1g_3p* (predicted)

mirBase accession

None

Sequence

38- CAAAUAUGUGUCGUGCCAAGUG -60

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