| MirGeneDB ID | Ebu-Mir-23-P5 |
|---|
| Family name |
MIR-23 (all species) |
|---|
| Seed |
UCACAUU |
|---|
| Species |
Inshore hagfish (Eptatretus burgeri) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ebu-Mir-23-P6
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. burgeri
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(Eburgeri_3) |
FYBX02009499.1: 1849196-1849255 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUUCGUGACGUAAAACGUCUGGUUCUGAGGGGGGUUCCUGGCAUCGUGAUUUGUGCUGCGAAGGAAAAUCACAUUGCCAGGGAUUACCACCCAGUCCCAGCACACGUCAGCACUGCACUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUCGUGACGUAAAACGU-- UU A - -| UC GUGCUG
CUGG CUG GG GG GGUUCCUGGCA GUGAUUU \
GACC GAC CC CC UUAGGGACCGU CACUAAA C
GUCACGUCACGACUGCACAC CU - A A^ UA AGGAAG
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ebu-Mir-23-P5_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GGGGUUCCUGGCAUCGUGAUUU -22
Get sequence
|
|---|
| Mature sequence |
Ebu-Mir-23-P5_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AUCACAUUGCCAGGGAUUACCAC -60
Get sequence
|
|---|
