| MirGeneDB ID | Ebu-Mir-181-P2e |
|---|
| Family name |
MIR-181 (all species) |
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| Seed |
ACAUUCA |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
Ebu-Mir-181-P1e
Ebu-Mir-181-P1f
Ebu-Mir-181-P2f
|
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| Orthologues |
|
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Eburgeri_3) |
FYBX02010476.1: 756390-756448 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUCCAACAUCUCCAAAACAAGAUCAUGCUAAACAUUCAUUGCUGUCAGUGGGUGUGAGUAUGGUCUACCCAGGGAGCACUGAAUGCACACUGUGGUCUAACUCACAGCUAGAGCUCACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUCCAACAUCUCCAAAACA--| GCUAAA U G AG GUGAGU
AGAUCAU CAUUCA UGCU UC UGGGU \
UCUGGUG GUAAGU ACGA GG ACCCA A
UCACUCGAGAUCGACACUCAA^ UCACAC C G -- UCUGGU
110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Ebu-Mir-181-P2e_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AACAUUCAUUGCUGUCAGUGGGU -23
Get sequence
|
|---|
| Star sequence |
Ebu-Mir-181-P2e_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CCAGGGAGCACUGAAUGCACA -59
Get sequence
|
|---|
