| MirGeneDB ID | Ebu-Mir-17-P3e |
|---|
| Family name |
MIR-17 (all species) |
|---|
| Seed |
AAAGUGC |
|---|
| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
|---|
| Paralogues |
Ebu-Mir-17-P1e
Ebu-Mir-17-P2e
Ebu-Mir-17-P3f-v1
Ebu-Mir-17-P3f-v2
Ebu-Mir-17-P4e
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Eburgeri_3) |
FYBX02010694.1: 1552582-1552644 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACGUGUCCGUCGUGCCGGGCCGUGCAGUGUGAAAGUGCACAUAGUGAUAGAUAGCCCAUCGUUCCUGCUAGCUACACUAUUUACACUUUUAACACUGUGCCGCCGCACUCUGCCAAGAGAAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACGUGUCCGUCGUGCCG-- C UG -| CAC A A GCCCAUC
GGC G CAGUG UGAAAGUG AUAGUG UAG UA \
CCG C GUCAC AUUUUCAC UAUCAC AUC AU G
AAAAGAGAACCGUCUCACG C GU A^ AUU - G CGUCCUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Ebu-Mir-17-P3e_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GAAAGUGCACAUAGUGAUAGAUA -23
Get sequence
|
|---|
| Star sequence |
Ebu-Mir-17-P3e_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- GCUACACUAUUUACACUUUUAAC -63
Get sequence
|
|---|
