| MirGeneDB ID | Dsi-Mir-3-P3 |
|---|
| Family name |
MIR-3 (all species) |
|---|
| Seed |
CACUGGG |
|---|
| Species |
Fruit fly (Drosophila simulans) |
|---|
| MiRBase ID |
dsi-mir-318
|
|---|
| Paralogues |
Dsi-Mir-3-P1
Dsi-Mir-3-P2
|
|---|
| Orthologues |
Dan-Mir-3-P3
Dma-Mir-3
Dme-Mir-3-P3
Dmo-Mir-3-P3
Dpu-Mir-3
Dya-Mir-3-P3
|
|---|
| Node of Origin (locus) |
Drosophila
|
|---|
| Node of Origin (family) |
Pancrustacea
|
|---|
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel) |
3R: 14842658-14842715 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAUGAAAAGGUCCUUCGGUUUCAGUUUAUGGGAUACACACAGUUCAGUUUUGUCACACUUUAAGCAUCACUGGGCUUUGUUUAUCUCAUGAGAGCGAAAUUUAUUCAACAGGGAACCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAUGAAAAGGUCCUUCG- AG-| C C UU UCACA
GUUUC UUUAUGGGAUA ACA AGUUCAGU UG C
UAAAG GAGUACUCUAU UGU UCGGGUCA AC U
UCCAAGGGACAACUUAUU CGA^ U U CU GAAUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Dsi-Mir-3-P3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGAUACACACAGUUCAGUUUUG -22
Get sequence
|
|---|
| Mature sequence |
Dsi-Mir-3-P3_3p |
| mirBase accession | MIMAT0008907 |
|---|
| Sequence |
36- UCACUGGGCUUUGUUUAUCUCA -58
Get sequence
|
|---|
