Mir-2-P7

MirGeneDB ID

Dsi-Mir-2-P7

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-11

Paralogues

Dsi-Mir-2-P1-v1 Dsi-Mir-2-P1-v2 Dsi-Mir-2-P2a Dsi-Mir-2-P2b1 Dsi-Mir-2-P2b2 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dsi-Mir-2-P5 Dsi-Mir-2-P6a Dsi-Mir-2-P6b Dsi-Mir-2-P6c Dsi-Mir-2-P8 Dsi-Mir-2-P9-v1 Dsi-Mir-2-P9-v2

Orthologues

Aae-Mir-2-P7 Asu-Mir-2-o7a Asu-Mir-2-o7b Bge-Mir-2-P7 Dan-Mir-2-P7 Dme-Mir-2-P7 Dmo-Mir-2-P7 Dya-Mir-2-P7 Hme-Mir-2-P7 Tca-Mir-2-P7

Node of Origin (locus)

Neoptera

Node of Origin (family)

Protostomia

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

3R: 3864432-3864492 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGCAUUUAGAUCUCCAUGAGGCGCACUUGUCAAGAACUUUCUCUGUGACCCGCGUGUACUUAAAAGCCGCAUCACAGUCUGAGUUCUUGCUGAGUGCGAAAUCCUCGAAGCAACAUUAAGC

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Structure

        10         20         30        40        50          
UGCAUUUAGAUCUCCAU-  GG-|       U         UCU      CC  CGUGUAC 
                  GA   CGCACUUG CAAGAACUU   CUGUGA  CG       \
                  CU   GCGUGAGU GUUCUUGAG   GACACU  GC       U
CGAAUUACAACGAAGCUC  AAA^       C         UCU      AC  CGAAAAU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

He	Wh

Star sequence

Dsi-Mir-2-P7_5p*

mirBase accession

None

Sequence

0- CAAGAACUUUCUCUGUGACCCG -22

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Mature sequence

Dsi-Mir-2-P7_3p

mirBase accession

MIMAT0008865

Sequence

39- CAUCACAGUCUGAGUUCUUGCU -61

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