| MirGeneDB ID | Dsi-Mir-1006 |
|---|
| Family name |
MIR-1006 (all species) |
|---|
| Seed |
AAAUUCG |
|---|
| Species |
Fruit fly (Drosophila simulans) |
|---|
| MiRBase ID |
dsi-mir-1006
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Dan-Mir-1006
Dme-Mir-1006
Dmo-Mir-1006
Dya-Mir-1006
|
|---|
| Node of Origin (locus) |
Drosophila
|
|---|
| Node of Origin (family) |
Drosophila
|
|---|
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel) |
2L: 16252437-16252500 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGUAUCCUGUCGACCCGGGUCAACUUCCAGGUGAGUUUGAAAUUGAAAUGCGUAAAUUGUUUGGUACAAUUUAAAUUCGAUUUCUUAUUCAUAGGUGCAAUACCAGUUGAUCUUCUGCUUGUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGUAUCCUGUCGACCCG---| CAACUU AG UU AUGCGUAAAUUGU
GGU CC GUGAGU GAAAUUGAA U
CCA GG UACUUA CUUUAGCUU U
GGUGUUCGUCUUCUAGUUGA^ UAACGU A- UU AAAUUUAACAUGG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Dsi-Mir-1006_5p* |
| mirBase accession | MIMAT0012443 |
|---|
| Sequence |
0- GUGAGUUUGAAAUUGAAAUGCGUAAA -26
Get sequence
|
|---|
| Mature sequence |
Dsi-Mir-1006_3p |
| mirBase accession | MIMAT0012444 |
|---|
| Sequence |
41- UAAAUUCGAUUUCUUAUUCAUAG -64
Get sequence
|
|---|
