| MirGeneDB ID | Dpu-Novel-5 |
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| Family name |
DPU-NOVEL-5 (all species) |
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| Seed |
ACUGGGU |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
Daphnia
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| Node of Origin (family) |
Daphnia
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Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_24: 361858-361920 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGAGCUCGACACAGAUAGCUGUUUUUAUUCGACACUACAUGUAUCUAGUAUGACCAGUUAUUACGAGUCACUGGGUAUUCAUUGUAGGGUCGAGACACUACAUGUAUCUAGUAUGACCAGUUAUUACGAGUCACUGGGUAUUCAUUGUAGGGUCGAACAAUUUCAGCCAUUUUCAUCAGUUCGGGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGAGCUCGACACAGAUA--| UUUUUAUUCGACACUACAUGUAUCUAGUAUGACCAGUUA
GCUG \
CGAC U
CGGGCUUGACUACUUUUAC^ UUUAACAAGCUGGGAUGUUACUUAUGGGUCACUGAGCAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Dpu-Novel-5_5p |
| mirBase accession | None |
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| Sequence |
38- CACUGGGUAUUCAUUGUAGGGUCGA -63
Get sequence
|
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| Star sequence |
Dpu-Novel-5_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GACACUACAUGUAUCUAGUAUGAC -24
Get sequence
|
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