| MirGeneDB ID | Dpu-Novel-3 |
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| Family name |
DPU-NOVEL-3 (all species) |
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| Seed |
UGCACUG |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
Daphnia
|
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| Node of Origin (family) |
Daphnia
|
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Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_13: 1740035-1740097 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGAUUUAAAAAGAUCGAACGACGACACUGACUUCGAGCCGACCAGUUGCUUUGUGGCAUCAAGACUUCAUUGCACUGUACGGUUCGAGGCGAAUGUCUCGUUGAAUAAACUACGAAUUUAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGAUUUAAAAAGAUCG---| C C- A AC U UU UGGCAU
AACGA GACA UG CUUCGAGCCG CAGU GC UG C
UUGCU CUGU GC GGAGCUUGGC GUCA CG AC A
UAAUUUAAGCAUCAAAUAAG^ - AA - AU - UU UUCAGA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Dpu-Novel-3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACUUCGAGCCGACCAGUUGCUUUG -24
Get sequence
|
|---|
| Mature sequence |
Dpu-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UUGCACUGUACGGUUCGAGGCGA -63
Get sequence
|
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