MirGeneDB 2.1
MirGeneDB ID

Dpu-Mir-2-o1

Family name MIR-2 (all species)
Seed AUCACAG
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues Dpu-Mir-2-o2  Dpu-Mir-2-P1  Dpu-Mir-2-P2  Dpu-Mir-2-P3  Dpu-Mir-2-P4 
Orthologues Aae-Mir-2-P1-v1  Aae-Mir-2-P1-v2  Bge-Mir-2-P1-v1  Bge-Mir-2-P1-v2  Csc-Mir-2-P1n  Csc-Mir-2-P1o  Dan-Mir-2-P1-v1  Dan-Mir-2-P1-v2  Dma-Mir-2-o1  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dme-Mir-2-P1-v2  Dmo-Mir-2-P1  Dsi-Mir-2-P1-v1  Dsi-Mir-2-P1-v2  Dya-Mir-2-P1-v1  Dya-Mir-2-P1-v2  Hme-Mir-2-P1-v1  Hme-Mir-2-P1-v2  Isc-Mir-2-P1  Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Tca-Mir-2-P1-v1  Tca-Mir-2-P1-v2 
Node of Origin (locus) Daphnia
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_32: 69416-69503 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o1)		 Mir-965 DAPPUscaffold_32: 27782-27843 [-] Ensembl
Mir-279-o2 DAPPUscaffold_32: 68663-68726 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUACCUCUCCAGUGUAGAGUAACGGGACCUAGGAACUACCGCUUGUGGUUGAUUGAAUUGUCGAUUUUUCCGAAUCGAUUCAAUUGUCUUAUUUCUAUCACAGUCGUAGUUACUAGAUAACGAUACUCGUUCGUCUCGUUAACGUGC
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Structure
        10          20        30        40        50        60        70    
CUUACCUCUCCAGUGUA--|    A  GGAC    G      C   U     U  UUGAAUUGUCGAUUUUUCCG 
                   GAGUA CG    CUAG AACUAC GCU GUGGU GA                    \
                   CUCAU GC    GAUC UUGAUG UGA CACUA CU                    A
CGUGCAAUUGCUCUGCUUG^    A  AAUA    A      C   -     U  UUAUUCUGUUAACUUAGCUA 
      140       130       120       110        100        90        80
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Dpu-Mir-2-o1_5p*
mirBase accessionNone
Sequence 
0- UAGGAACUACCGCUUGUGGUUGA -23
Get sequence
Mature sequence

Dpu-Mir-2-o1_3p
mirBase accessionNone
Sequence 
66- UAUCACAGUCGUAGUUACUAGA -88
Get sequence