| MirGeneDB ID | Dmo-Mir-9540 |
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| Family name |
MIR-9540 (all species) |
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| Seed |
UCAGUGC |
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| Species |
Fruit fly (Drosophila mojavensis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
D. mojavensis
|
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| Node of Origin (family) |
D. mojavensis
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Genome context
(Dmoj_caf1) |
scaffold_6540: 6632480-6632542 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUCUAUAUGAAAUAAAUUUUAUAUGACAUAAUUCGUACGUUACACUGAACAGAUUUGUGUACGAAUGCUCUGUUCAGUGCGAUGUGUGAAUCAUGUAUGUAAAAAGAGGCAGCGAAGAUGAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GUCUAUAUGAAAUAAAU---| A A UA AUUUGUGU
UUUAUAUG CAU AUUCGUACGU CACUGAACAG \
AAAUGUAU GUA UAAGUGUGUA GUGACUUGUC A
UAAGUAGAAGCGACGGAGAA^ - C GC UCGUAAGC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Star sequence |
Dmo-Mir-9540_5p* |
| mirBase accession | None |
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| Sequence |
0- AUUCGUACGUUACACUGAACAGA -23
Get sequence
|
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| Mature sequence |
Dmo-Mir-9540_3p |
| mirBase accession | None |
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| Sequence |
42- UUCAGUGCGAUGUGUGAAUCA -63
Get sequence
|
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