| MirGeneDB ID | Dma-Novel-5-v2 |
|---|
| Family name |
DMA-NOVEL-5 (all species) |
|---|
| Seed |
CUGGGUA |
|---|
| Species |
Large common water flea (Daphnia magna) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Dma-Novel-5-v1
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
Daphnia
|
|---|
| Node of Origin (family) |
Daphnia
|
|---|
Genome context
(DMA_ASM399081) |
NC_046174.1: 2509081-2509143 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUCUACGAUUUAUUUCAAGCUGUUUUAUUCGACACUACAUGUAUCUAGUAUGACCAGUUAUACGGAGUCACUGGGUAUUCAUUGUAGGGUCGAGACACUACAUGUAUCUAGUAUGACCAGUUAUACGGAGUCACUGGGUAUUCAUUGUAGGGUCGAAUAAUGUCAGCCAUUAUCACGUCAACGUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUCUACGAUUUAUUUCAA- UU-| UCGACACUACAUGUAUCUAGUAUGACCAGUUA
GCUG UUAU \
CGAC AAUA U
CGUGCAACUGCACUAUUAC UGU^ AGCUGGGAUGUUACUUAUGGGUCACUGAGGCA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| 01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Dma-Novel-5-v2_5p |
| mirBase accession | None |
|---|
| Sequence |
39- ACUGGGUAUUCAUUGUAGGGUCGA -63
Get sequence
|
|---|
| Star sequence |
Dma-Novel-5-v2_3p* |
| mirBase accession | None |
|---|
| Sequence |
0- GACACUACAUGUAUCUAGUAUGA -23
Get sequence
|
|---|
