| MirGeneDB ID | Dma-Novel-2 |
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| Family name |
DMA-NOVEL-2 (all species) |
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| Seed |
CUGGGUU |
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| Species |
Large common water flea (Daphnia magna) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
Daphnia
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| Node of Origin (family) |
Daphnia
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Genome context
(DMA_ASM399081) |
NC_046174.1: 2509619-2509677 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAUCUACAGAUAAUUAGCAUUAGUUUGUGUCCAGUUUAACAUAGCCCACAGAUUAUGUACAUUUCUCUGGGUUAUGAUUAAGACUGGGCAAAGACUUCUGCUCAUCAACAGAUAUCCUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAUCUACAGAUAAUUAG-- UU G - -| C UUAUG
CA AGUUU UGUCCAGUU UAA CAUAGCCCA AGA \
GU UCAGA ACGGGUCAG AUU GUAUUGGGU UCU U
CUCCUAUAGACAACUACUC CU A A A^ C UUACA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Dma-Novel-2_5p* |
| mirBase accession | None |
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| Sequence |
0- CCAGUUUAACAUAGCCCACAGA -22
Get sequence
|
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| Mature sequence |
Dma-Novel-2_3p |
| mirBase accession | None |
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| Sequence |
35- UCUGGGUUAUGAUUAAGACUGGGC -59
Get sequence
|
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