| MirGeneDB ID | Dma-Mir-965 |
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| Family name |
MIR-965 (all species) |
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| Seed |
AAGCGUA |
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| Species |
Large common water flea (Daphnia magna) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aae-Mir-965
Bge-Mir-965
Dan-Mir-965
Dme-Mir-965
Dmo-Mir-965
Dpu-Mir-965
Dsi-Mir-965
Dya-Mir-965
Hme-Mir-965
Tca-Mir-965
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| Node of Origin (locus) |
Pancrustacea
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| Node of Origin (family) |
Pancrustacea
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Genome context
(DMA_ASM399081) |
NC_046175.1: 6247768-6247831 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAAUGCGAAGAAGCGUGCAAGGGCAAAGCAAGGGAAAGGUUAUAGCUCUUAUGUGUCUUAUUUUGAUUACCAUAAGCGUAUGGCUUUUCCCCUGCAAUGUCACUUGAUGAGAACUGCUUACAGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UAAUGCGAAGAAGCGUG- -| AA A G U UGUCUUAU
CAAG GGCA GCA GGGAAAGGUUAUA C CUUAUG \
GUUC CUGU CGU CCCUUUUCGGUAU G GAAUAC U
CGACAUUCGUCAAGAGUA A^ AA C - C CAUUAGUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| Star sequence |
Dma-Mir-965_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGGAAAGGUUAUAGCUCUUAUG -23
Get sequence
|
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| Mature sequence |
Dma-Mir-965_3p |
| mirBase accession | None |
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| Sequence |
42- UAAGCGUAUGGCUUUUCCCCUG -64
Get sequence
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