| MirGeneDB ID | Dma-Mir-282-v2 |
|---|
| Family name |
MIR-282 (all species) |
|---|
| Seed |
AACGUCU |
|---|
| Species |
Large common water flea (Daphnia magna) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Dma-Mir-282-v1
|
|---|
| Orthologues |
Bge-Mir-282
Dan-Mir-282
Dme-Mir-282
Dmo-Mir-282
Dpu-Mir-282
Dsi-Mir-282
Dya-Mir-282
Hme-Mir-282
Tca-Mir-282
|
|---|
| Node of Origin (locus) |
Pancrustacea
|
|---|
| Node of Origin (family) |
Pancrustacea
|
|---|
Genome context
(DMA_ASM399081) |
NC_046178.1: 847714-847800 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCCCACAAUACGCAUAACAUAUUUGCUAGGUAGCCUCUCCUAGGCUUUGUCUUGUUGACGUUUGGGUUCUUGGCUUCGGCAAAAGAAAUUCUAGACAACGUCUUGGAGAGCGCUACUUAGCAUAUAUCGAAAGUCAACCGGUACACG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
UCCCACAAUACGCAUAAC-- U -| U U UUGUUGACGUUUGGGUUCUU
AUAU UGCUAGGUAGC CUCUCC AGGC UUGUC G
UAUA ACGAUUCAUCG GAGAGG UCUG AACAG G
GCACAUGGCCAACUGAAAGC U C^ U C AUCUUAAAGAAAACGGCUUC
140 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| 01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Dma-Mir-282-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UAGCCUCUCCUAGGCUUUGUC -21
Get sequence
|
|---|
| Mature sequence |
Dma-Mir-282-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
65- CAACGUCUUGGAGAGCGCUACU -87
Get sequence
|
|---|
