| MirGeneDB ID | Dma-Mir-279-o4 |
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| Family name |
MIR-279 (all species) |
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| Seed |
GACUAGA |
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| Species |
Large common water flea (Daphnia magna) |
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| MiRBase ID |
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| Paralogues |
Dma-Mir-279-o1
Dma-Mir-279-o2
Dma-Mir-279-o3
Dma-Mir-279-o5
Dma-Mir-279-o6
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| Orthologues |
Bpl-Mir-279
Cgi-Mir-279
Dpu-Mir-279-o4
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Sme-Mir-279-P4
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| Node of Origin (locus) |
Daphnia
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| Node of Origin (family) |
Protostomia
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Genome context
(DMA_ASM399081) |
NC_046174.1: 9091763-9091828 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUCCAACAGCUAGGGUUGGGCGCUCUCUAGGUGGGUCUGUUUCUAGUGCAUGUGUUUUCUGCCUGUUUGUUCAUGACUAGAUCCAUACUCAUCUAAAGGGACCCAAUCGUUCUACAUUAGUAAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AUUCCAACAGCUAGGGU---| CG C C UU G UGUUUUCUG
UGGG CUCU UAGGUGGGU UG UCUAGU CAUG \
ACCC GGGA AUCUACUCA AC AGAUCA GUAC C
AAAAUGAUUACAUCUUGCUA^ A- A U CU - UUGUUUGUC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. Note that there is a second Drosha cut -1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Dma-Mir-279-o4_5p* |
| mirBase accession | None |
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| Sequence |
0- GGUGGGUCUGUUUCUAGUGCAUG -23
Get sequence
|
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| Mature sequence |
Dma-Mir-279-o4_3p |
| mirBase accession | None |
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| Sequence |
44- UGACUAGAUCCAUACUCAUCUA -66
Get sequence
|
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