| MirGeneDB ID | Dan-Novel-20 |
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| Family name |
DAN-NOVEL-20 (all species) |
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| Seed |
AAGCGCU |
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| Species |
Fruit fly (Drosophila ananassae) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
D. ananassae
|
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| Node of Origin (family) |
D. ananassae
|
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Genome context
(Dana_caf1) |
scaffold_12903: 550138-550198 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAAAGGAUAACCCCCAGAUAAGUGUAGUACUCCUAGUGGUAGAGACGGCUUAUAUUUUUUCAUCCAUAUAAGCGCUCUAACCACUAGAAGAUACUCUGCUUAUAGAGUCUUCAGGAUCUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UAAAGGAUAACCCCCAG- GU - C -| A G UUUUU
AUAAGU AGUA CU CUAGUGG UAGAG CG CUUAUA U
UAUUCG UCAU GA GAUCACC AUCUC GC GAAUAU C
CUUCUAGGACUUCUGAGA UC A A A^ - - ACCUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Dan-Novel-20_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCCUAGUGGUAGAGACGGCUUAUA -24
Get sequence
|
|---|
| Mature sequence |
Dan-Novel-20_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UAAGCGCUCUAACCACUAGAAGA -61
Get sequence
|
|---|
