| MirGeneDB ID | Dan-Novel-19 |
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| Family name |
DAN-NOVEL-19 (all species) |
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| Seed |
UCCCUAA |
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| Species |
Fruit fly (Drosophila ananassae) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
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| Node of Origin (locus) |
D. ananassae
|
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| Node of Origin (family) |
D. ananassae
|
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Genome context
(Dana_caf1) |
scaffold_12903: 535322-535384 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUUUUAGUUAUCUUCCUUUUCAUGUUUAUCAUCCCUAAUGAGAGCUAUUUUCAUUAAUUUUUCGAAAAUGAUAAUAUCUCUGUGUUAGGGUGACAAAUUUGAGAACAGUCUACAAAAUAAAGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUUUUAGUUAUCUUCCU--| U A U - C U UUAAUUU
UUUCA GUUU UCA CCCUAAUG AGAG UAUU UCA \
AGAGU UAAA AGU GGGAUUGU UCUC AUAA AGU U
UGAAAUAAAACAUCUGACA^ U C - G U U AAAAGCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Dan-Novel-19_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUCCCUAAUGAGAGCUAUUUUCA -23
Get sequence
|
|---|
| Co-mature sequence |
Dan-Novel-19_3p |
| mirBase accession | None |
|---|
| Sequence |
40- AUAAUAUCUCUGUGUUAGGGUGA -63
Get sequence
|
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